Questions and Answers

From Alexis Poss - "Our" very special Genetic Counselor, who is helps us better understand Opitz G/BBB Syndrome.

We thank you so very much, Alexis!
     
Q. What is a Level 2 Ultrasound?
A.
A level 2 ultrasound is typically what is used in a tertiary care center, as compared to the standard ultrasound equipment that is found in many obstetrician's offices. Often, people have a detailed scan of the baby's organ systems in the mid-trimester as part of routine care. A level 2 ultrasound would be better called a "targeted" scan. It also should be noted that the difference is not made so much by the equipment, as by the operator.
     

Q. What can be determined by a Level 2 Ultrasound?
A. *
Cleft palates are generally observed by looking at the tooth buds and noticing if there is a break in the horseshoe-like appearance. Cleft lips can be seen as a break in the skin.

*Agenesis of the corpus callosum is a very difficult call prenatally. One of our top radiologists the other day said that he believes he has as many false positives as he has false negatives on prenatal ultrasound.

*Hypertelorism is observed by expecting to see an equal ratio of the left eye, the space between, and the right eye. If this is not in equal thirds the radiologist may suspect hypertelorism. There are also standard measurements for a given fetal age.

*When looking for it, it is possible to identify hypospadias prenatally

     
Q. How reliable is the information gained from a Level 2 Ultrasound?
A.
In general I would recommend people think of ultrasound as the doctor doing his best to look at the shadow of an image. It is as much an art as it is a science. It is dependant to a huge degree on operator skill and experience. The absence of observing something is not the same as it not being there. As far as the Opitz G/BBB syndrome is concerned, I have hope that a skilled imager, knowing what to look for, can provide reassurance (or otherwise) but I also know that many, many times a child is born with the Opitz G/BBB syndrome without prior warning to the parents, despite having had an ultrasound prenatally.
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Q. What is F.I.S.H.?
A.
F.I.S.H. stands for flourescent in situ hybridization. It is a technique used in a cytogenetics laboratory (the place that looked at your chromosomes also called a karyotype). Maybe a good analogy would be to think of two pieces of velcro - one with the loops and one with the hairs - that stick together. Imagine the piece with the loops is neon green and the piece with the hairs is white on a white shirt. If the loopy piece is stuck on it's easy to spot. It the shirt is missing the hairy piece the loopy piece won't bind and so you don't see this neon green strip. This is the idea behind FISH. They take a probe that will bind to a tiny part of a chromosome. They made this probe fluorescent so that they can easily see it. If the tiny part of the chromosome is there you'll see your fluorescent probe. If the tiny part of the chromosome is missing you won't see your probe.
FISH was developed to find out if a piece of the chromosome is present or absent when it's too small to be seen by doing a standard karyotype where they look at the chromosomes under a microscope. FISH can detect a deletion as small as 50 Kb (that's 50,000 base pairs of DNA). As you can see, this method is good when a condition is most often caused by a large deletion (a good example is Williams syndrome which often has 2 Mb or 2,000,000 base pairs missing), but it is not the method of choice when people most often have one base pair change (a famous example would be sickle cell disease in which an A is changed to a T changing the sixth amino acid from glutamic acid to valine).
As you can see, it is possible for the gene that causes dominantly inherited G/BBB syndrome to have a mutation that is too small to be detected routinely by FISH analysis. This said, there have been reports of cases in which FISH for 22q11 was diagnostic, and so it continues to be used as part of the work-up.
     
Q. Does the FISH test tell us for certain if our child has Opitz G/BBB syndrome?
A.
No
, the FISH test that can be used is a probe to chromosome 22 at band q11.2. This probe was developed for a different syndrome (it goes by many names such as Velocardiofacial syndrome, DiGeorge syndrome, CATCH-22, Shprintzen syndrome, etc.). It was thought that a gene on chromosome 22 may cause the dominantly inherited form of G/BBB syndrome (again, we know there is a gene on a chromosome other than X or Y because of the families we know with dominant inheritance). Therefore if a person with G/BBB syndrome had a deletion, it could be picked up by doing FISH for 22q11. Unfortunately we know that many children with G/BBB do not have a detectable deletion by this method. This means that someone in whom the diagnosis is uncertain cannot have a FISH test and know definitively that they do not have G/BBB if the test comes back negative.
     
Q. What is SSCP analysis?
A.
SSCP stands for
Single Strand Conformational Polymorphism. Let's think of this technique as some pretty funky bowling. First you woodle up your strip of DNA into a ball. Because of the properties of that strip of DNA it will make a unique shape. The next step, running a gel, can be thought of like you throw this unique ball down a bowling alley. How far did this lumpy ball go? Now imagine this strip of DNA has a mutation. Instead of making the expected lumpy ball, it made a slightly different shape. Now you bowl this lumpy ball and find that it goes a different distance. Here is your clue that the first and second balls are different.
SSCP works by going exon by exon, seeing if there are any changes by seeing if they run through the gel differently from what you expect. This is great because you don't need to know where mutations occur before trying it. It is the fastest method to screen a gene for mutations. A disadvantage is that the test is limited to looking at exons. Exons are the coding sequence of a gene, that is, the part of the gene that gets made into the protein that the body will use. On either side of each exon are introns, sometimes called the junk DNA that gets spliced out. At the beginning and end of a gene there are sequences that turn the gene on and off. We now know that a condition can be caused not only by mutations in the coding regions of a gene, but also by mutations in these non-coding parts of a gene. If that were the case for the MID1 gene, unfortunately SSCP analysis would not have detected those changes.
For your information, this is genomic DNA we're talking about and there are 4 strips involved, but I hope that the above picture is sufficient to understand what's going on.
     
Q. Since our blood samples tested negative for the MID1 gene, what does that mean?
A.
ANY sample that has been sent to Dr. Muenke from Utah has not had a mutation detected in the MID1 gene. They are now caught-up, and have tested everything they've received. We still have very good reason to believe there is a gene for the Opitz G/BBB syndrome on the X chromosome. This was first said to be the case because of the pattern of inheritance that we see in families. This is still true. The question now is, does the MID1 gene represent only a very small fraction of the cases of G/BBB syndrome? There must be at least one other gene that causes this condition, or perhaps there are mutations in the MID1 gene but they could not be detected by the method (SSCP analysis) that was used.
     
Q. Has the MID2 gene been found in a human?
A.
Dr. Muenke has related to me that Dr. Ballabio has not found a MID2 mutation in a human yet. This means that it is an interesting animal model, but it remains to be shown that the MID2 gene causes G/BBB syndrome in humans.
     
Q. Is there a Y linked form of Opitz G/BBB syndrome?
A.
There is no Y-linked form of the G/BBB syndrome. A gene on the Y chromosome would be expected to affect all males and be passed from father to son.
     
Q. What is chromosome painting?
A.
Generally I think of using chromosome painting to identify a chromosome or a piece of a chromosome that was not able to be identified by normal karyotype banding techniques. So, for example, someone has the usual 46 chromosomes plus a tiny piece of something. This mystery piece is referred to as a marker chromosome. Chromosome paints use the same idea of a probe (my velcro story) but what's cool is that they paint each chromosome a different color - all the way up and down the chromosome. So when you look with a fluorescent light under a microscope you see two purple chromosome 1s, two green chromosome 2s, two pink chromosome 3s and so on. Now if the marker chromosome lights up pink you know that it's derived from a chromosome 3.
     

Q. What is gonadal mosaicism?
A.
Well, to get us on the same page remember that a dominant condition is caused when one copy of a gene (from our mother or father) has a mutation that causes the condition. Usually dominant conditions are passed down from affected person to affected person in a family. Sometimes, when a baby develops, a new mutation occurs which causes the condition. In this case the baby has a risk (50%) to have affected children, but no one else in the family carries a gene mutation.
You might imagine that a new mutation can occur virtually anywhere in the body and that the number of cells with the mutation varies depending on the stage of development when the mutation occurred. Some people may have met someone who is said to be mosaic for Down Syndrome, meaning that only a portion of the cells in their body have the extra chromosome 21. Sometimes people who are mosaic for Down Syndrome seem to be more mildly affected than people who have the extra chromosome in all the cells of their body because of the normal activity of cells in their body with the usual 46 chromosome compliment.
Our gonads are our reproductive organs (a woman's ovaries, a man's testes). If you imagine a new mutation occurred in the gene for G/BBB syndrome in some of the cells that will become eggs or some of the cells that become sperm, you might imagine that the person would not be affected, but would be at risk to have multiple affected children. In other words, rather than a new mutation occurring in the developing child, the new mutation occurred in the egg or sperm cells of the parent. Thus each time a child is conceived there is a chance (related to the number of gonadal cells with a mutation) that the child will be affected. When a geneticist looks at a family like this it is a puzzle because the geneticist would have thought either the mother or father would have signs and symptoms of the dominant condition for there to be more than one affected child. Gonadal mosaicism has been shown to explain this puzzle in other conditions.

It's so difficult to be patient with the researchers when your family plans are on hold. I can only hope that we will take great strides forward very soon, and have a test available for G/BBB that detects nearly all affected persons. Thank goodness we have people like Drs. Muenke and Ballabio who are interested and actively pursuing this.

     

Q. How often do mutations cause Opitz G/BBB syndrome?

A. There are a couple of concepts here that come into play. I think that you have a good handle on them, I'll just provide the vocabulary.

First, there is the idea of fitness. This is the idea that if a condition is so severe that the affected person does not have children, there must be new mutations in the world for the condition to be perpetuated. If, on the other hand, someone can have the condition and have children at the normal rate, the rate of new mutations does not need to be high. This can be represented mathematically. The person who is completely unable to have offspring has a fitness of 0 and the person who has offspring completely as usual has a fitness of 1. You might imagine the G/BBB syndrome has a fitness somewhere in between. We know of some affected people who will probably have offspring at the usual rate, and there are other affected people who probably will not become parents.

An X-linked condition with a fitness of 0 (such as Duchenne Muscular Dystrophy) has a new mutation rate equal to 1/3. Given this, the very highest the new mutation rate could be for X-linked Opitz syndrome is 1/3 or 33% of the time. To use another example, classic hemophilia has a fitness of 0.7 and a new mutation rate of 15%.

Okay, for you math-buffs out there Haldane's rule is: m = s x u divided by 2u + v'
where s is selective disadvantage, v is the mutation rate in males, and u is the mutation rate in females. m is the proportion of all patients with an X-linked recessive disease who have a new mutation.

Clinically, someone who is an expert in G/BBB syndrome like Dr. Opitz can make educated guesses that someone in the family tree (talking about X-linked inheritance now) appears to have been a carrier or affected. It is possible, for example, that a maternal uncle was affected or even the maternal grandfather, although frequently the condition is expected to have gone silently from female to female in the family. Female carriers of X-linked Opitz syndrome may have very subtle signs such as hypertelorism (widely spaced eyes).

Another concept in genetics that I should touch upon is the idea of variable expressivity. Imagine several people in a family have the mutation that causes G/BBB syndrome. However, one person has serious medical issues, another has only slightly annoying medical concerns, and a third person never even noticed that he/she was different (although a medical geneticist with a critical eye could pick him/her out).

If we were to go one step futher and say that some people with the gene mutation clinically have G/BBB syndrome, and other people in the family have the gene mutation but clinically have no signs or symptoms of the condition, this would be called reduced penetrance. With reduced penetrance it is an all-or-none (not shades of grey)phenomenon. For example, we are collecting samples on families with spontaneous pneumothoracies. In this condition women with the gene mutation will have a pneumothorax in their lifetime about 20% of the time, while men with the gene mutation will have a pneumothorax 50% of the time.

The reason I bring up these ideas is that we clearly see that G/BBB syndrome seems to "skip generations." Now if we were to sift back through information you may have on your relatives and ancestors we may find subtle signs (very mild expression of the condition) and we may even consider that the condition entirely skipped somone (reduced penetrance). So now when we are asked, "how often is there a new mutation with dominantly inherited G/BBB syndrome?" we have a very difficult question before us. While it may appear to come out of nowhere (i.e. a new mutation) we cannot be entirely confident that this is the case. When pressed, Dr. Opitz honestly replied that no one knows the answer; he could not venture a guess.

I believe that we will be able to re-evaluate the situation once we know the gene mutations that kids with G/BBB syndrome carry and can trace it back through the family. We have to wait for the empiric answer to come from a study of the genes, rather than our clinical impressions.

I hope this helps.


Thank you Alexis. You help us understand!

     

Alexis offers her most sincere apologies if she has misrepresented any of this information.

Opitz G/BBB Glossary of Terms